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Compute the difference matix between a marix and another matrix in MATLAB

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Given a matrix A in matlab with:
A = [3,1;4,5;7,8]
and another matrix B which could be referred to as some reference points (each row is reference point that is to be compared to each row of A),
B = [1,1;1,2]
I need to compute a matrix C, such that
C = [4,5;25,18;85,72]
Where each row of C is the difference(squared L2 norm) between each row of A and the rows of B. One possible way to do this in MATLAB is to first create a zero matrix C, C = zeros(5,2), and then use double for-loops to fill in the appropriate value. Is there any other efficient/simpler way in MATLAB?
C = zeros(5,2)
for i = 1:rows
for j = 1:rows2
C(i,j) = (norm(A(i,:)-B(j,:)))^2

  1 Comment

Pravin Jagtap
Pravin Jagtap on 6 Feb 2020
Hello Jesujoba,
I think the way you have written the code is inconsistent with what you want to achieve. I would suggest that do the hand calculations for smaller numbers and make sure that your matrix 'C' is correct. Also, check the size of matrix C and the values of 'rows' and 'rows2' variables.

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Accepted Answer

David Goodmanson
David Goodmanson on 6 Feb 2020
Edited: David Goodmanson on 12 Feb 2020
Hello Jesujoba,
it looks like A and B must have the same number of columns but can have a different number of rows. The for-loop method and the repmat method (below) agree, although for the integer data I used, repmat is exact but for-loop has some tiny numerical blips. That's because in for-loop, norm takes a square root and you square that out again.
For loops aren't all bad. Repmat may be faster and more efficient when A and B are large, but with for-loop the intent is clearer from just looking at the code. Repmat would require annotation to even know what its task is.
If there are 10 columns and A and B each have 100 rows, then on my PC the calculation by for-loop takes about 140 millisec. Not bad. For 800 rows, for-loop takes less than a sec. Repmat in that case comes in at about .05 sec, and while it can be a point of pride to make things faster, speed and vectorization aren't everything.
To me one of the biggest values of the repmat method is not speed, but as a particular example of messing around with matrices in Matlab. For a small matrix like in this problem, taking out the semicolons on each line illustrates the process.
% data
% sizes of rows and columns
ca = 2;
cb = ca; % required
ra = 3;
rb = 2;
A = randi(10,ra,ca);
B = randi(10,rb,cb);
% method 1
clear C
for i = 1:ra
for j = 1:rb
C(i,j) = (norm(A(i,:)-B(j,:)))^2;
% method 2
Arep = repmat(A,rb,1);
% make multiple copies of each row of B, stacked vertially
Brep = repmat(B',ra,1);
Brep = reshape(Brep,ca,[])'; % using [] auto calculates the number of columns
Cvals = (Arep-Brep).^2;
C2 = sum(Cvals,2);
C2 = reshape(C2,ra,rb);


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More Answers (1)

Steven Lord
Steven Lord on 6 Feb 2020
You can eliminate one of your loops using the vecnorm function.
>> vecnorm(A-B(1, :), 2, 2).^2
ans =


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