Segmentation Violation detected in MCR

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king Yang
king Yang on 9 Jun 2021
Commented: Stephane Ayello on 7 Oct 2021
I used a tool named Gistic2.0 which utilizing MATLAB compiler Runtime 2014a but got a crash when it start. My operating system is Ubuntu 20.04.2 LTS. I tried removing and reinstalling MATLAB compiler runtime but it did not help.
Setting Matlab MCR root to /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime
GISTIC version 2.0.23
100
------------------------------------------------------------------------
Segmentation violation detected at Tue Jun 8 20:50:03 2021
------------------------------------------------------------------------
Configuration:
Crash Decoding : Disabled
Current Visual : 0x21 (class 4, depth 24)
Default Encoding : UTF-8
GNU C Library : 2.31 stable
MATLAB Architecture: glnxa64
MATLAB Root : /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83
MATLAB Version : 8.3.0.532 (R2014a)
Operating System : Linux 5.4.0-74-generic #83-Ubuntu SMP Sat May 8 02:35:39 UTC 2021 x86_64
Processor ID : x86 Family 6 Model 158 Stepping 10, GenuineIntel
Virtual Machine : Java 1.7.0_11-b21 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
Window System : The X.Org Foundation (12009000), display :1
Fault Count: 1
Abnormal termination:
Segmentation violation
Register State (from fault):
RAX = 0000000000000000 RBX = 00007faa74bc93e0
RCX = 0000000000000000 RDX = 0000000000000000
RSP = 00007faafeed8de8 RBP = 00007faaf8038d80
RSI = 000000003e07c725 RDI = 0000000000000000
R8 = 0000000000000007 R9 = 00312d3634363031
R10 = 00007faafeed8c70 R11 = 0000000000000000
R12 = 0000000000000000 R13 = 00007faafeed9180
R14 = 0000000000000000 R15 = 0000000000000000
RIP = 00007fab12bad675 EFL = 0000000000010283
CS = 0033 FS = 0000 GS = 0000
Stack Trace (from fault):
[ 0] 0x00007fab12bad675 /lib/x86_64-linux-gnu/libc.so.6+01619573
[ 1] 0x00007fab01b7ac18 /usr/lib/x86_64-linux-gnu/libX11.so.6+00134168 XLoadQueryFont+00000056
[ 2] 0x00007fab049f6df0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwuix.so+00261616
[ 3] 0x00007fab049f7aae /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwuix.so+00264878
[ 4] 0x00007fab049f7d29 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwuix.so+00265513
[ 5] 0x00007fab05149143 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00663875 _Z21wm_SetUnadjWindowFontP10WinRec_tagP6mxFont+00000083
[ 6] 0x00007fab0514974b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00665419 _Z22wm_GetDeviceFontExtentP10WinRec_tagP6mxFontPKcdP6mwrect+00000315
[ 7] 0x00007fab05164fff /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00778239 uiGetDeviceFont+00000815
[ 8] 0x00007fab05165171 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00778609 _Z15uiSetWindowFontP10WinRec_tagP6mxFont+00000017
[ 9] 0x00007fab05149013 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00663571 _Z16wm_SetWindowFontP10WinRec_tagP6mxFont+00000083
[ 10] 0x00007faad8835195 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05001621
[ 11] 0x00007fab0518089d /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00891037 _ZN11gui_objects10tickpicker12nicefyLimitsERNS0_14AxisDescriptorENS0_8AxisTypeE+00000173
[ 12] 0x00007fab05180cc3 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00892099 _ZN11gui_objects10tickpicker12nicefyLimitsERNS0_14AxisDescriptorE+00000019
[ 13] 0x00007faad88356d9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05002969
[ 14] 0x00007faad87997df /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+04364255
[ 15] 0x00007faad8784b1f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+04279071
[ 16] 0x00007faad8888740 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05343040
[ 17] 0x00007faad888827c /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05341820
[ 18] 0x00007faad887b2b0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05288624
[ 19] 0x00007fab03757ded /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwudd.so+00634349
[ 20] 0x00007fab03751153 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwudd.so+00606547 _ZN11UDInterface15notifyPropEventEP16UDDatabaseClientPK10UDPropInfoPK11UDEventInfoP7UDEvent+00000115
[ 21] 0x00007fab03754671 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwudd.so+00620145 _ZN11UDInterface4setEEP16UDDatabaseClientP10UDPropInfoPvP13UDErrorStatus+00000593
[ 22] 0x00007faad88855b6 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05330358
[ 23] 0x00007faad887fadd /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05307101
[ 24] 0x00007faad887e0d0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05300432
[ 25] 0x00007faad88646f5 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05195509
[ 26] 0x00007faad8871fd0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05251024
[ 27] 0x00007faad886b408 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05223432
[ 28] 0x00007faad8872432 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05252146
[ 29] 0x00007faad8877113 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05271827 hgSet+00001107
[ 30] 0x00007faae1009742 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhgbuiltins.so+00345922
[ 31] 0x00007fab07536de3 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00417251
[ 32] 0x00007fab07523874 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00338036 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000244
[ 33] 0x00007fab0693f20e /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02601486
[ 34] 0x00007fab068fa1d0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02318800
[ 35] 0x00007fab068fc1ea /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02327018
[ 36] 0x00007fab068ff167 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02339175
[ 37] 0x00007fab068fd26f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02331247
[ 38] 0x00007fab068fdec4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02334404
[ 39] 0x00007fab0695b30b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02716427
[ 40] 0x00007fab07574ad9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00670425 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697
[ 41] 0x00007fab06b052b4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+04461236
[ 42] 0x00007fab06b06bc9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+04467657
[ 43] 0x00007fab06b073fc /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+04469756
[ 44] 0x00007fab069816e3 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02873059
[ 45] 0x00007fab0699109e /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02936990
[ 46] 0x00007fab06991183 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02937219
[ 47] 0x00007fab06ac7172 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+04206962
[ 48] 0x00007fab068fc589 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02327945
[ 49] 0x00007fab068ff167 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02339175
[ 50] 0x00007fab068fd26f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02331247
[ 51] 0x00007fab068fdec4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02334404
[ 52] 0x00007fab0695b30b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02716427
[ 53] 0x00007fab07574ad9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00670425 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697
[ 54] 0x00007fab06b052b4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+04461236
[ 55] 0x00007fab06b06bc9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+04467657
[ 56] 0x00007fab06b073fc /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+04469756
[ 57] 0x00007fab069816e3 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02873059
[ 58] 0x00007fab0699109e /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02936990
[ 59] 0x00007fab06991183 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02937219
[ 60] 0x00007fab06ac7172 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+04206962
[ 61] 0x00007fab068fc589 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02327945
[ 62] 0x00007fab068ff167 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02339175
[ 63] 0x00007fab068fd26f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02331247
[ 64] 0x00007fab068fdec4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02334404
[ 65] 0x00007fab0695b30b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02716427
[ 66] 0x00007fab07574ad9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00670425 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697
[ 67] 0x00007fab0693f20e /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02601486
[ 68] 0x00007fab068fa1d0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02318800
[ 69] 0x00007fab068fc1ea /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02327018
[ 70] 0x00007fab068ff167 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02339175
[ 71] 0x00007fab068fd26f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02331247
[ 72] 0x00007fab068fdec4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02334404
[ 73] 0x00007fab0695b30b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02716427
[ 74] 0x00007fab07574ad9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00670425 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697
[ 75] 0x00007fab0693f20e /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02601486
[ 76] 0x00007fab068fa1d0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02318800
[ 77] 0x00007fab068fc1ea /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02327018
[ 78] 0x00007fab068ff167 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02339175
[ 79] 0x00007fab068fd26f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02331247
[ 80] 0x00007fab068fdec4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02334404
[ 81] 0x00007fab0695b30b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02716427
[ 82] 0x00007fab07574ad9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00670425 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697
[ 83] 0x00007fab0693f20e /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02601486
[ 84] 0x00007fab068fa1d0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02318800
[ 85] 0x00007fab068fc1ea /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02327018
[ 86] 0x00007fab068ff167 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02339175
[ 87] 0x00007fab068fd26f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02331247
[ 88] 0x00007fab068fdec4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02334404
[ 89] 0x00007fab0695b30b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02716427
[ 90] 0x00007fab07574ad9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00670425 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697
[ 91] 0x00007fab0693f20e /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02601486
[ 92] 0x00007fab068fa1d0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02318800
[ 93] 0x00007fab068fc1ea /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02327018
[ 94] 0x00007fab068ff167 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02339175
[ 95] 0x00007fab068fd26f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02331247
[ 96] 0x00007fab068fdec4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02334404
[ 97] 0x00007fab0695b30b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02716427
[ 98] 0x00007fab07574ad9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00670425 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697
[ 99] 0x00007fab0693f20e /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02601486
[100] 0x00007fab068fa1d0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02318800
[101] 0x00007fab068fc1ea /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02327018
[102] 0x00007fab068ff167 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02339175
[103] 0x00007fab068fd26f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02331247
[104] 0x00007fab068fdec4 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02334404
[105] 0x00007fab0695b30b /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02716427
[106] 0x00007fab07574ad9 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_dispatcher.so+00670425 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000697
[107] 0x00007fab06924360 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02491232
[108] 0x00007fab06923329 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02487081
[109] 0x00007fab06898456 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+01918038 inCallFcnWithTrap+00000086
[110] 0x00007fab068f02ab /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+02278059
[111] 0x00007fab06899bf6 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwm_interpreter.so+01924086 _Z44inCallFcnWithTrapInDesiredWSAndPublishEventsiPP11mxArray_tagiS1_PKcbP15inWorkSpace_tag+00000102
[112] 0x00007fab07056e8f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwiqm.so+00614031 _ZN3iqm15BaseFEvalPlugin7executeEP15inWorkSpace_tagRN5boost10shared_ptrIN14cmddistributor17IIPCompletedEventEEE+00000287
[113] 0x00007fab07d6d689 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwmcr.so+00435849
[114] 0x00007fab07052565 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwiqm.so+00595301
[115] 0x00007fab0703eee8 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwiqm.so+00515816
[116] 0x00007fab04a0ad46 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwuix.so+00343366
[117] 0x00007fab049ed382 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwuix.so+00222082
[118] 0x00007fab123ad50f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwservices.so+02323727
[119] 0x00007fab123ad67c /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwservices.so+02324092
[120] 0x00007fab123a957f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwservices.so+02307455
[121] 0x00007fab123ae9b5 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwservices.so+02329013
[122] 0x00007fab123aede7 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwservices.so+02330087
[123] 0x00007fab123af4c0 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwservices.so+02331840 _Z25svWS_ProcessPendingEventsiib+00000080
[124] 0x00007fab07d5c098 /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwmcr.so+00364696
[125] 0x00007fab07d5c3bf /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwmcr.so+00365503
[126] 0x00007fab07d5728f /home/kingyang/harddisk/BIO_TOOl/GISTIC2.0/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwmcr.so+00344719
[127] 0x00007fab12c1d609 /lib/x86_64-linux-gnu/libpthread.so.0+00038409
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Answers (1)

Isaias Hernandez
Isaias Hernandez on 15 Jul 2021
I found the same error @king Yang, could you solve it?
Thanks
  4 Comments
Sumit Kumar
Sumit Kumar on 30 Aug 2021
Dear I know genepattern but I have large number of sample so I want to run all sample locally. I am using it in docker (isolated envirnment) and it is working. If you need it I may share it via google drive. Thanks
Stephane Ayello
Stephane Ayello on 7 Oct 2021
Hello, I have the same problem (segmentation violation with Ubuntu 20, Matlab R2014a).
Do you have a solution? Thanks

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