A MATLAB reader for MASCOT Generic Format (.mgf) files

Version 1.2.0 (1.97 KB) by Joris Meurs
Reading MASCOT Generic Format files with MATLAB
55 Downloads
Updated 1 Jul 2020

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Function to read and extract data from MASCOT Generic Format (.mgf) files
The .mgf format contains minimal metadata (spectrum title, retention
time, precursor mass, precursor intensity and charge) and the
corresponding MS2 spectrum (https://fiehnlab.ucdavis.edu/projects/lipidblast/mgf-files)

INPUT
A character array (1 file) or cell array (multiple files) are optional
input. When the file path is not given as input, files can be browsed for

OUTPUT
The output is a structure containing the following fields:
- scanName: Title given by ProteoWizard (character array)
- precursorMass: Mass of precursor ion (double)
- precursorIntensity: Intensity of precursor ion (double)
- z: Charge of precursor ion (double)
- scanData: MS/MS spectrum (N x 2 cell containing m/z values
and intensities)

Cite As

Joris Meurs (2024). A MATLAB reader for MASCOT Generic Format (.mgf) files (https://www.mathworks.com/matlabcentral/fileexchange/76033-a-matlab-reader-for-mascot-generic-format-mgf-files), MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2017a
Compatible with any release
Platform Compatibility
Windows macOS Linux

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Version Published Release Notes
1.2.0

Bug fixed regarding missing charge states

1.1.0

- Fixed error when charge state is absent
- Fixed error when intensity is missing for precursor ion

1.0.0