Main Content

Bioinformatics Toolbox

Read, analyze, and visualize genomic and proteomic data

Bioinformatics Toolbox™ provides algorithms and apps for building bioinformatics pipelines, Next Generation Sequencing (NGS), microarray analysis, mass spectrometry, and gene ontology. You can read genomic and proteomic data and explore this data with the Genomics Viewer app and visualize with spatial heatmaps and clustergrams. The toolbox (with Statistics and Machine Learning Toolbox™) provides statistical, regression, classification, and (with Deep Learning Toolbox™) deep learning techniques to build complete analysis pipelines.

The Biopipeline Designer app lets you interactively build bioinformatics pipelines for genomic data analysis, locally or in the cloud. You can use a combination of built-in bioinformatics pipeline blocks that integrate proven NGS libraries and custom blocks to extend analyses with community tools. You can create a pipeline to preprocess reads, map them to a reference genome, and perform statistical analysis, like RNA-Seq differential expression analysis or ChIP-Seq genome-wide analysis.

Get Started

Learn the basics of Bioinformatics Toolbox

Bioinformatics Pipeline

Build and run end-to-end bioinformatics workflows as pipelines

High-Throughput Sequencing

Gene expression, transcription factor, and methylation analysis of Next-Generation Sequencing (NGS) data, including RNA-Seq and ChIP-Seq

Microarray Analysis

Gene expression and genetic variant analysis of microarray data

Sequence Analysis

Genomic and proteomic sequences, alignment, and phylogenetics

Structural Analysis

Visualize and manipulate 3-D structures of proteins and other biomolecules; RNA secondary structure prediction and visualization

Mass Spectrometry and Bioanalytics

Data from separation techniques that produce traces with peaks, including MS, LC/MS, NMR, chromatography, and electrophoresis