Problem Fitting data to 3 Gaussians

3 views (last 30 days)
Jason
Jason on 21 Nov 2016
Commented: Jason on 21 Nov 2016
Hi. I am trying to improve on a gaussian fit to a linescan through the image below.(i.e the green line). Whilst the Gaussian fit isn't too bad, I want to be able to account for the "wings" in the outer parts of the data. This is actually an airy disk.
I thought I could just include another two gaussians in my fitting function to account for these. This is my code:
%Define Gauss Equation (remember the . notation
gaussEqn ='a*exp(-0.5*((x-b)/(c^2)).^2)+d+a1*exp(-0.5*((x-b1)/(c1^2)).^2)+d1+a2*exp(-0.5*((x-b2)/(c2^2)).^2)+d2';
where a,b,c,d are my single gaussian fits and the a1,b1,c1,d1 & a2,b2,c2,d2 are the additional gaussian fits for the outer peaks.
By setting:
a0 = max(ydata(:))-min(ydata(:));
d0 = min(ydata(:));
c=5;
aw=a0/7; (This is the approx amplitude of the "wing" peaks
and the initial parameters as :
[f,gof]=fit(xdata,ydata,gaussEqn,'Normalize','off', 'StartPoint',[a0,b0,sqrt(c0),d0,aw,b0-8,sqrt(c0),d0,aw,b0+8,sqrt(c0),d0])
I am getting silly results, there is something not quite right. The fitting works not too bad for a single exponential, but as soon as i add the other 2 gaussians into the fitting, the results are way off. I have attached the raw data.
a=coeffs(1);
b=coeffs(2);
c=coeffs(3); %need to square it as used c^2 in fitting equation to enforce +ve values
c=c^2;
d=coeffs(4);
rsquared=gof.rsquare;
a1=coeffs(5);
b1=coeffs(6);
c1=coeffs(7);
c1=c1^2;
d1=coeffs(8);
a2=coeffs(9);
b2=coeffs(10);
c2=coeffs(11);
c2=c2^2;
d2=coeffs(12);

Answers (1)

Massimo Zanetti
Massimo Zanetti on 21 Nov 2016
Edited: Massimo Zanetti on 21 Nov 2016
More efficient using built-in code to fit Guassian distributions. Try look at this function which allows you to choose the number of Gaussian components of the mixture:
  1 Comment
Jason
Jason on 21 Nov 2016
Thanks for the pointer. Its not clear from the examples how I apply this to my line plot (xdata,ydata)?

Sign in to comment.

Categories

Find more on Curve Fitting Toolbox in Help Center and File Exchange

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!