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Problem running file from pushbutton which doesnt occur when evaluating command in GUI code

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Hi,
I'm currently very confused about this.
In my callback for a pushbutton it runs an .m file which contains a while loop in it.
If I highlight and then evaluate it, there's no problems, it runs the file and the loop goes round as it should.
However, when I run the whole GUI and press the button it only goes through the loop once.
It doesnt matter how many times i do either, or what order i do it, evalutaing the bit in the callback works but the pushbutton doesnt.
Why is this?
Thanks,
Henry

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