Problem 2513. Genome decoding

Created by Guillaume

Solve Later

{"relationships":[{"relationshipType":"http://schemas.mathworks.com/matlab/code/2013/relationships/document","relationshipId":"rId1","target":"/matlab/document.xml"},{"relationshipType":"http://schemas.mathworks.com/matlab/code/2013/relationships/output","relationshipId":"rId2","target":"/matlab/output.xml"}],"parts":[{"partUri":"/matlab/document.xml","relationship":[],"contentType":"application/vnd.mathworks.matlab.code.document+xml","content":"<?xml version=\"1.0\" encoding=\"UTF-8\"?><w:document xmlns:w=\"http://schemas.openxmlformats.org/wordprocessingml/2006/main\"><w:body><w:p><w:pPr><w:pStyle w:val=\"text\"/></w:pPr><w:r><w:t>Inspired by a question on the answer forum:</w:t></w:r></w:p><w:p><w:pPr><w:pStyle w:val=\"text\"/><w:jc w:val=\"left\"/></w:pPr><w:r><w:t>You are given a matrix of 8-bit integers which encodes a genome. Each integer can be converted into a sequence by converting it first to binary and then converting bit pairs using the rule A = 00, C = 01, T = 10, G = 11. For example, 177 -&gt; 10110001 -&gt; TGAC.</w:t></w:r></w:p><w:p><w:pPr><w:pStyle w:val=\"text\"/><w:jc w:val=\"left\"/></w:pPr><w:r><w:t>Convert the matrix into a cell array of sequences.</w:t></w:r></w:p><w:p><w:pPr><w:pStyle w:val=\"text\"/><w:jc w:val=\"left\"/></w:pPr><w:r><w:t>str2num and regexp not allowed.</w:t></w:r></w:p></w:body></w:document>"},{"partUri":"/matlab/output.xml","contentType":"text/xml","content":"<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?><embeddedOutputs><metaData><evaluationState>manual</evaluationState><layoutState>code</layoutState><outputStatus>ready</outputStatus></metaData><outputArray type=\"array\"/><regionArray type=\"array\"/></embeddedOutputs>"}]}

Solve

Solution Stats

69 Solutions
34 Solvers

Last Solution submitted on Sep 13, 2020

Last 200 Solutions

Problem Comments

Solution Comments

Solution 487377

1 Comment

1 Comment

Abdullah Caliskan on 18 Aug 2014

great!

Problem Recent Solvers34

Problem Tags

genome numbers to string

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Problem 2513. Genome decoding

Solution Stats

Last 200 Solutions

Problem Comments

Solution Comments

Problem Recent Solvers34

Suggested Problems

More from this Author9

Problem Tags

Community Treasure Hunt

Problem 2513. Genome decoding

Solution Stats

Last 200 Solutions

Problem Comments

Solution Comments

Problem Recent Solvers34

Suggested Problems

More from this Author9

Problem Tags

Community Treasure Hunt

Players