Parametric Mapping Scripts for MRI data
These scripts allow you to create parametric mapping of 3D MRI data and extract the parameters:T1,T2,perfusion constant, fast apparent diffusion coefficient, diffusion constant and apparent diffusion coefficient.
You will need to download these as a supplement:
nifti libraries: https://uk.mathworks.com/matlabcentral/fileexchange/8797-tools-for-nifti-and-analyze-image
threshold: https://uk.mathworks.com/matlabcentral/fileexchange/29372-thresholding-an-image
file sort: https://uk.mathworks.com/matlabcentral/fileexchange/47434-natural-order-filename-sort
Cite As
matt birkbeck (2021). Parametric Mapping Scripts for MRI data (https://www.mathworks.com/matlabcentral/fileexchange/64579-parametric-mapping-scripts-for-mri-data), MATLAB Central File Exchange. Retrieved .
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Inspired by: Tools for NIfTI and ANALYZE image, Thresholding an image, Natural-Order Filename Sort
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ParametricMapping/
ParametricMapping/niilib/
ParametricMapping/niilib/NIFFTI/
ParametricMapping/sortfiles/
ParametricMapping/thresholding/
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Hi,
thank you for sharing the codes. I work with Bruker and at the beginning, its a bit different,in the t2mapSPINECHO.m code i don't succeed and find how can i save the Mask(binary Image) created by the threshold function. B=dir('*.png'); this command is not enough. i think i have missed a point.
Thank you