107 results

This repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti htt

Electrophysiology-Tutorial-for-Neuroscience_jpThis repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti

This is a tutorial for key data analysis steps used by neuroscientists - filtering, spike extraction, PCA, clustering, and spectral analysis

WinWCP MATLAB Importer


by David

Import and Plot WinWCP Patch Clamp Electrophysiology Files into MATLAB



by Mark Cafaro

Data Acquisition System

Electrophysiology data analysis

Clarinet is a MATLAB® app designed to analyze electrophysiology experiments.Developed for neuroscience research, Clarinet allows you to analyze neuronal signals acquired with a variety of

App developed for cardiac electrophysiology research

Application developed for cardiac electrophysiology research. By David de Diego Maffrand, at ITACA institute, UPV.

A toolbox for biological signal modeling and processing, written mainly in Matlab



by srinivas.gs

Wrapper for MATLAB DAQ. Easy recording, instrument control for experiments. e.g. electrophysiology.



by Marius Pachitariu

Fast and accurate spike sorting toolbox



by Martin Cousineau

Brainstorm: Open source application for MEG/EEG data analysis

Brainstorm is a collaborative, open-source application dedicated to the analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal electrophysiology. Our objective is to share a

a version of abfload which is capable of reading abf 2.0 files

Data Browser


by Phil Larimer

A utility to browse data files that involve one or more channels of data over time.

Plotting and Analysis of Neuroscience Database-Oriented Research Applications

PANDORA is a Matlab Toolbox for analyzing neuronal electrophysiology data and constructing databases. PANDORA: Makes database management accessible from your electrophysiology project; Works



by Rajiv Narayan

Computes the peri-stimulus time histogram for neural spike times


Version 2023.01.16

by Raha Dastgheyb

Anakyze spike trains exported from multi-electrode arrays

Required analysis codes for the joint analysis which we have introduced in Kapucu et al. (2015).



by Ritchie Smith

Plots dose/response curve and calculates EC50 and Hill Coefficient.



by Rajiv Narayan

Plotting Routine to display neural spike trains

A class wrapper for the MODTRAN 5 atmospheric radiative transfer code.

Set of functions for the basic analysis of spike data from neurophysiological experiments

Real time channel streaming with the CED's Power1401 device.

Detection of location of spike times

Plots spike rasters from spike times or binary trains. Faster than most implementations.



by Harald Hentschke

abfload imports data in the Axon abf format (three different recording modes).



by Rune W Berg

This function identifies and removes spikes fra a trace of and membrane potential recording.

Simulink implementation of a sophisticated ventricular action potential

myocyte electrophysiology: a theoretical investigation.Biophys J. 2007 92:1522-1543.The action potential is elicited by the block named Stimulus : 1 Hz is the initial condition.Initial conditions of the

Algorithm from Fraser and Schwartz, "Recording from the same neurons chronically in motor cortex"

A MATLAB implementation of the DeepInterpolation principle.

of the example inference workflows. You can individually view (👀) or run (▶️) these examples on MATLAB Online:NicknameTrained ModelSample dataViewRun"Ephys" (electrophysiology



by Phil Larimer

Software for acquisition and manipulation of electrophysiological data from neurons.

Demo simulator of a firing biological neuron.

A MATLAB toolbox for interacting with the Allen Brain Observatory

2Large-scale neural probe recordings"ephys" (electrophysiology)detailsVisual Coding 2P 3Two-photon calcium imaging"ophys" (optical physiology)detailsThe Visual Coding datasets are both collected from the living

Read files generated by the Intan Technologies GUI for recording multichannel data.

Matlab class to import HEKA Patchmaster files

Detect postsynaptic currents or potentials

Utilities for managing Neuropixel SpikeGLX datasets, Kilosort2 sorting, waveform extraction and other tools

SqueakySpk v0.1


by Jon Newman

SQUEAKYSPK: Matlab class for making extracellular, microelectrode array data squeaky clean.



by Benjamin Kraus

A MEX function to read a PLX data file (Plexon, Inc.).


Version 0.0.200

by Kevin Tan

Robust pelectrophysiology tools with GPU acceleration

for electrophysiology. Core features include noise-resistant signal processing, robust statistics & extensive hardware acceleration.ElectroCUDA is intended for any multichannel field potential

SincResample resamples signals to arbitrary lengths/frequencies and/or timeshifts them

Obtains the current source density from local field potential data recorded from a linear electrode array


Version 4.5

by A David Redish

MClust is a Matlab-based spike sorting toolbox for the separation of putative cells from multi-site neurophysiological recordings. It is pa

Spike Extraction Tool

Spike Detection



by SeqNMF FeeLab

An algorithm for unsupervised discovery of sequential structure

A function to plot rasters of neural spikes from a matrix of spike times.



by Daniel Hill

UltraMegaSort2000 - spike sorting and quality metrics of extracellular spike data



by Forrest Collman

Reads in a Neuralynx NVT Cheetah binary file into Matlab

calculates peri-stimulus time histogram (PSTH) + variance of neural spike times

Script to parse the MODTRAN 4 Tape7.scn output file.

Raster and PETH for neuroscientists and others :)



by Kai

Plotting function for waveform data; window discrimination



by Cengiz Gunay

Load I and V traces from a pClamp ABF file that contains voltage clamp data



by Joseph O'Doherty

Find elements within many ranges. Faster than find() for large N. Useful for PSTHs and rasterplots.

This algorithm calculates the correlated spectral entropy (CorSE) based functional connectivity.

Single electrode extracellular recording simulator


Version 1.0.03

by Steven

Core OpenEP code - Matlab implementation

OpenEP is a free and feature-full implementation of data parsing and analysis tools for cardiac electrophysiology research. OpenEP Data Parsing Modules allow proprietary data formats from major



by R P

Generate spike vector time series (SPKVEC) from the TIMESTAMPS of the spikes.

Repository for experiments with BackyardBrains Hardware

A behavioural model for Analogue Front End for developing neural spike sorting systems

Implements an improved regularity analysis for spike trains obtained from auditory neurons.

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