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A variable is specified by more than one assignment rule
Hi, I have a species A_Total = a + b + c, where a, b and c are other species in the same compartment. I have to set a boundary...

10 days ago | 1 answer | 0

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answer

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Lognormal distribution parameters mu and sigma
Hi, I want to generate a lognormal distribution for a set of data measurments using Simbiology model analyzer. I need to inser...

16 days ago | 2 answers | 0

2

answers

Question


Extracting Histogram data for plot generation
Hi, I generated a sample of lognormal distribution using Simbiology analyzer. I want to extract the data of the samples' hist...

18 days ago | 2 answers | 0

2

answers

Question


Dimensional analysis issue because of the function 'log' in the rule
Hi! When I run a simulation in my model developed in Simbiolog, I received the following warning message: "Unable to perform d...

1 month ago | 1 answer | 0

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answer

Question


Sensitivity analysis in Simbiology
Hi, I want to perform sensitivity analysis for my Simbiology model. I have encountered the following error. Would you please ex...

4 months ago | 1 answer | 0

1

answer

Question


Change in simulation output with changing in the units of stop time
Hi, I defined units for all parameters in my Smbiology model and the model runs simulations. The unit of time for all paramet...

7 months ago | 1 answer | 0

1

answer

Question


Failure of dimensional analysis for a rule
Hi, I have a rule y=x^0.35. x has the dimension of mass. An error message showed up saying that the exponent must be an integer...

7 months ago | 2 answers | 0

2

answers

Question


Dimension of the species
Hi, In my model in Simbiology, it has a species with dimension of (molecules/time) and connected with a release rate reaction. ...

7 months ago | 1 answer | 0

1

answer

Question


Adding erf(x) to a rule in Simbiology
Hello, I have a rule in my model Y(x) = x, for example, in Simbiology app. I want o add the erf(x) for Y(x) to run a simulati...

11 months ago | 1 answer | 0

1

answer

Question


Simulation error in Simbiology
Hi, I checked the tumor growth model in the library of Simbiology. I noticed if I increase the drug concentration to very high ...

11 months ago | 1 answer | 0

1

answer

Question


Error message regarding CVODES
Hi, While I was running a simulation in a model I developed in Simbiology, I recieved the following error: CVODES returned -...

11 months ago | 0 answers | 0

0

answers

Question


Unites of the transfer rates
Hi, The simulations of my model differ at different unites of transfer rates. For example, the following are plots for the same...

12 months ago | 1 answer | 0

1

answer

Question


Adding equations as a function of time
Hi, Could you please help me in solving the following: I set a trigger event in Simbiology that when 'X' species exceeds a cer...

1 year ago | 1 answer | 0

1

answer

Question


The fluctuation of the content of a species between negative and positive
The model I am developing in Simbiology includes a drug species in which large repeated amounts of doses are injected. It has no...

1 year ago | 1 answer | 0

1

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Question


What does a dashed line in simbiology mean?
I found a reaction connecting between two species_1 and species_2 in a simbiology model. There is a dashed line connecting betwe...

1 year ago | 2 answers | 0

2

answers

Question


Adding and configuring events
In simbiology, there is an event trigger that configure events at a SPECIFIC TIME. In my model, the content of m species is numb...

1 year ago | 1 answer | 0

1

answer

Question


How to assign a transfer rate which changes with time in Simbiology?
I need to connect between two species in Simbiology. The transfer rate (k) in the reaction is an equation which depends on time ...

1 year ago | 1 answer | 0

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