Professional Interests: Mass Spectrometry, Peptides & Proteins, High-throughput screening, Data mining.

Answered

Error while using extractFeatures function

Hello, Could be multiple reasons why you get this error. Did you check this? It lists a couple of causes and solutions to your...

Error while using extractFeatures function

Hello, Could be multiple reasons why you get this error. Did you check this? It lists a couple of causes and solutions to your...

1 year ago | 0

Answered

Plot data arrays from loaded data structure file

Hello Shane Palmer, You are not the first one to encounter this problem. For approaches to solve your problem, have a look her...

Plot data arrays from loaded data structure file

Hello Shane Palmer, You are not the first one to encounter this problem. For approaches to solve your problem, have a look her...

1 year ago | 0

| accepted

Answered

I am using findpeaks (data,locations) func to find time period of trigonometric function. Values(max,location) for only one peak are getting stored, hence time period is coming out to be zero. please help.

Dear Abhijeet, I am not sure what you mean with "hence time period is coming out to be zero", but I do believe I can be of som...

I am using findpeaks (data,locations) func to find time period of trigonometric function. Values(max,location) for only one peak are getting stored, hence time period is coming out to be zero. please help.

Dear Abhijeet, I am not sure what you mean with "hence time period is coming out to be zero", but I do believe I can be of som...

1 year ago | 1

| accepted

Answered

How to plot as lines instead of dots

Dear shdotcom, Looks like you could use surf and mesh for that job. If you need it to plot it exactly as your example, keep ...

How to plot as lines instead of dots

Dear shdotcom, Looks like you could use surf and mesh for that job. If you need it to plot it exactly as your example, keep ...

1 year ago | 0

Answered

How to resampling a signal (not interp1) which has a non-uniform sample frequency?

Sounds like a perfect job for msresample, so you can make two signals with the same sample rate to your liking. Use something li...

How to resampling a signal (not interp1) which has a non-uniform sample frequency?

Sounds like a perfect job for msresample, so you can make two signals with the same sample rate to your liking. Use something li...

1 year ago | 1

| accepted

Answered

Plot ECG and ABP together

You mean using two different y-axis for each signal like this?

Plot ECG and ABP together

You mean using two different y-axis for each signal like this?

1 year ago | 0

Answered

How can I extract data from a table and put it into a new one?

Beste Tessa, You almost wrote it yourself already, if I understand your problem correctly....? You already wrote in pseudocode ...

How can I extract data from a table and put it into a new one?

Beste Tessa, You almost wrote it yourself already, if I understand your problem correctly....? You already wrote in pseudocode ...

1 year ago | 0

| accepted

Answered

Mapping between the probe set ID and the corresponding gene symbol

Dear Swarnambiga A, Hope this is not too late (and what you are looking for, I'm more into proteins...), but I'll give it a ...

Mapping between the probe set ID and the corresponding gene symbol

Dear Swarnambiga A, Hope this is not too late (and what you are looking for, I'm more into proteins...), but I'll give it a ...

1 year ago | 1

| accepted

Answered

how to do ecg classifications

Dear Khouloud Daboussi, If you now have a big table with all your features (DWT, variance, mean, etc) and the myocardial inf...

how to do ecg classifications

Dear Khouloud Daboussi, If you now have a big table with all your features (DWT, variance, mean, etc) and the myocardial inf...

1 year ago | 0

| accepted

Answered

Change the Marker size and color in the legend of a scatter plot

To set the properties of your legend see here.

Change the Marker size and color in the legend of a scatter plot

To set the properties of your legend see here.

2 years ago | 0

Answered

fastest way of amino acid composition feature extruction using matab? my codes are working fine but need a simplify it further

Although your question is poorly formulated, and I agree with Image Analyst about the formatting of your code.... Here is my a...

fastest way of amino acid composition feature extruction using matab? my codes are working fine but need a simplify it further

Although your question is poorly formulated, and I agree with Image Analyst about the formatting of your code.... Here is my a...

2 years ago | 0

Answered

How to remove a baseline without using sgolayfilt

As far as I know, sgolayfilt does not subtract the background signal (what I think you mean when you refer to 'same baseline'), ...

How to remove a baseline without using sgolayfilt

As far as I know, sgolayfilt does not subtract the background signal (what I think you mean when you refer to 'same baseline'), ...

3 years ago | 0

Answered

how to split dna sequence into three letters each

Dear Aarsha mv, I assume you want to get the codons from your piece of DNA, but correct me if I am wrong. Let us take th...

how to split dna sequence into three letters each

Dear Aarsha mv, I assume you want to get the codons from your piece of DNA, but correct me if I am wrong. Let us take th...

3 years ago | 1

Answered

Can I use nwalign to align one sequence to the reverse-complement of a second sequence?

Dear Dan Allison, Wouldn't it be easier if you use the <https://www.mathworks.com/help/bioinfo/ref/oligoprop.html oligoprop ...

Can I use nwalign to align one sequence to the reverse-complement of a second sequence?

Dear Dan Allison, Wouldn't it be easier if you use the <https://www.mathworks.com/help/bioinfo/ref/oligoprop.html oligoprop ...

4 years ago | 1

Answered

Is it possible to seqlinkage with a maximum parsimony or minimum evolution method?

Dear Anton Huegel, I am not really familiar with constructing phylogenetic trees in MATLAB, but I believe you could use the ...

Is it possible to seqlinkage with a maximum parsimony or minimum evolution method?

Dear Anton Huegel, I am not really familiar with constructing phylogenetic trees in MATLAB, but I believe you could use the ...

4 years ago | 1

| accepted

Answered

Explicitly set BP/Pixel in Biological Sequence Viewer?

Dear David Roe, I am not really sure what you mean by 'the same scale', but I assume for now multiple aligned sequences... if...

Explicitly set BP/Pixel in Biological Sequence Viewer?

Dear David Roe, I am not really sure what you mean by 'the same scale', but I assume for now multiple aligned sequences... if...

4 years ago | 0

Answered

Hello everybody, Iam Ram kumar. May i know how to calculate phi and psi angles with x,y,z co-ordinates from PDB files.. is there any formula to do ..?

Dear Ram Kumar, You could use <https://www.mathworks.com/help/bioinfo/ref/ramachandran.html Ramachandran>. If you do somethi...

Hello everybody, Iam Ram kumar. May i know how to calculate phi and psi angles with x,y,z co-ordinates from PDB files.. is there any formula to do ..?

Dear Ram Kumar, You could use <https://www.mathworks.com/help/bioinfo/ref/ramachandran.html Ramachandran>. If you do somethi...

4 years ago | 2

Answered

getgenbank function not working

Dear Aiden, This problem is probably due to some recent changes in the web protocol from the NCBI (see <https://www.ncbi.nlm...

getgenbank function not working

Dear Aiden, This problem is probably due to some recent changes in the web protocol from the NCBI (see <https://www.ncbi.nlm...

4 years ago | 1

| accepted

Answered

Train SVM through classification Learner

Dear Tahira Batool, The classificationLearner app is not able to import multiple variables from the workspace and work with ...

Train SVM through classification Learner

Dear Tahira Batool, The classificationLearner app is not able to import multiple variables from the workspace and work with ...

4 years ago | 2

| accepted

Answered

How Matlab Classification Learner calculate a model accuracy

Dear Alessandro, Reproducible results can be obtained if one uses a <http://nl.mathworks.com/help/matlab/math/creating-and-c...

How Matlab Classification Learner calculate a model accuracy

Dear Alessandro, Reproducible results can be obtained if one uses a <http://nl.mathworks.com/help/matlab/math/creating-and-c...

4 years ago | 1

| accepted

Answered

I am new to programming. I need to build a decision tree to classify setosa (class =1 ) against combined virginca and versicolor (class = 2) in matlab

Dear Kunal, I think you will find all you need <https://www.mathworks.com/help/stats/examples/classification.html#zmw57dd0e3...

I am new to programming. I need to build a decision tree to classify setosa (class =1 ) against combined virginca and versicolor (class = 2) in matlab

Dear Kunal, I think you will find all you need <https://www.mathworks.com/help/stats/examples/classification.html#zmw57dd0e3...

4 years ago | 0

Answered

Estmated time required for my following program

Dear Taher, How long such a programm will take to run depends on many things (both you hardware & your software). But... you...

Estmated time required for my following program

Dear Taher, How long such a programm will take to run depends on many things (both you hardware & your software). But... you...

4 years ago | 1

Answered

How to pre-process Next Generation Sequencing data using MATLAB?

Dear Ehsan, The page you refer to is a good start to get familiar with processing NGS data, but there are (a lot more!!) fun...

How to pre-process Next Generation Sequencing data using MATLAB?

Dear Ehsan, The page you refer to is a good start to get familiar with processing NGS data, but there are (a lot more!!) fun...

4 years ago | 0

| accepted

Answered

Compare sequence alignments of datasets

Dear Raffael, This is possible in MATLAB. I suggest you have a look at <http://www.mathworks.com/help/bioinfo/sequence-alignm...

Compare sequence alignments of datasets

Dear Raffael, This is possible in MATLAB. I suggest you have a look at <http://www.mathworks.com/help/bioinfo/sequence-alignm...

4 years ago | 0

Answered

I Have this scoring matrix, I want to change just the first column and row from zeros to 0, -2, -4, -6, -8 and so on. I don't know how to change it. any help please ??

Just to be sure: is the following what you are trying to do (just implemented for the first column though)? for i = 1:lengt...

I Have this scoring matrix, I want to change just the first column and row from zeros to 0, -2, -4, -6, -8 and so on. I don't know how to change it. any help please ??

Just to be sure: is the following what you are trying to do (just implemented for the first column though)? for i = 1:lengt...

4 years ago | 0

Answered

"Attempt to reference field of non-structure array" error when using Makemid Command

I'm not really sure, because your question does not give much specific information about your situation (such as the actual name...

"Attempt to reference field of non-structure array" error when using Makemid Command

I'm not really sure, because your question does not give much specific information about your situation (such as the actual name...

4 years ago | 0

| accepted

Answered

Can any1 please explain me what does X= 0.01 : 0.01 : 2; and li=30/72 meant in ECG signal generation using Fourier series work done by R.KARTHIK sir. Iam new in MATLAB.Its very urgent.

X= 0.01:0.01:2; means X-values vary from 0.01 to 2 with a step size of 0.01. So you end up with X being 200 values equall...

Can any1 please explain me what does X= 0.01 : 0.01 : 2; and li=30/72 meant in ECG signal generation using Fourier series work done by R.KARTHIK sir. Iam new in MATLAB.Its very urgent.

X= 0.01:0.01:2; means X-values vary from 0.01 to 2 with a step size of 0.01. So you end up with X being 200 values equall...

4 years ago | 1

Answered

IN NEED OF MATLAB CODE FOR ENVELOPE ANALYSIS.

Maybe have a look <https://www.mathworks.com/matlabcentral/fileexchange/?utf8=%25E2%259C%2593&term=envelope here>, could be a go...

IN NEED OF MATLAB CODE FOR ENVELOPE ANALYSIS.

Maybe have a look <https://www.mathworks.com/matlabcentral/fileexchange/?utf8=%25E2%259C%2593&term=envelope here>, could be a go...

4 years ago | 0

| accepted

Answered

base line correction of a non uniformly spaced spectral data points

Dear Abdul Kalam, You could resample your non-uniform spaced spectral data to obtain uniform spaced spectral data. I am ...

base line correction of a non uniformly spaced spectral data points

Dear Abdul Kalam, You could resample your non-uniform spaced spectral data to obtain uniform spaced spectral data. I am ...

4 years ago | 1

| accepted

Answered

I am getting an error instruction when I rerun the Signal processing toolbox function 'resample' with a new vesion of Matlab 2016a that I have just installed? How do I ensure the toolbox in in the call pathway?

I think you will find your answer somewhere around <https://www.mathworks.com/matlabcentral/answers/5200-undefined-function-or-m...

I am getting an error instruction when I rerun the Signal processing toolbox function 'resample' with a new vesion of Matlab 2016a that I have just installed? How do I ensure the toolbox in in the call pathway?

I think you will find your answer somewhere around <https://www.mathworks.com/matlabcentral/answers/5200-undefined-function-or-m...

4 years ago | 0