Can anyone tell me what is the error in line [R_list] ?Whenever I am running it it is showing error.
1 view (last 30 days)
Show older comments
function SPR_matrix_profile_comparison_v2
close all;
clear all;
%variables
n_Ma=1.493; %målt ved 589nm @ 20 C
n_buffer=1.33156; %HEPES buffer
d_Ma=1E-9;
%vinkelting
theta_start=49.01; %GRADER! !
theta_slut=54.99; %GRADER! !
thetasteps=250;
theta_start=theta_start/360*2*pi ;
theta_slut=theta_slut/360*2*pi ;
deltatheta=(theta_slut-theta_start)/(thetasteps-1);
for t =1:1:thetasteps;
theta=theta_start+deltatheta*(t-1);
vinkel(t)=theta/(2* pi)*360 ;
end
figure(1) ;
hold on
for l =2:8
d_Au=l*10E-9;
[R_list]=spr_calc(n_Ma,n_buffer,d_Ma,d_Au,vinkel,theta_start,theta_slut,deltatheta,thetasteps,theta);
% [y_data]=data_import(vinkel);
if l==2
plot( vinkel , R_list ,' k ')
end
if l==3
plot ( vinkel , R_list ,' g ')
end
if l==4
plot ( vinkel , R_list ,'m')
end
if l==5
plot ( vinkel , R_list ,'c')
end
if l==6
plot ( vinkel , R_list ,' b ')
end
if l==7
plot ( vinkel , R_list , ' y ' )
end
if l==8
plot ( vinkel , R_list , ' r ' )
end
end
%axis ( [ theta_start *180/ pi theta_slut *180/ pi+1e-3 0 1 ] )
legend ( '20nm' , ' 30nm' , ' 40nm' , ' 50nm' , ' 60nm' , ' 70nm' , ' 80nm' , ' Location ' , ' NorthEastOutside ' )
%l egend ( 'n_3=1.3300 ' , 'n_3=1.3340 ' , 'n_3=1.3380 ' , 'n_3=1.3420 ' , 'n_3=1.3460 ' , 'n_3=1.3500 ' , ' Locatxlabel ( ' Angle o f incidence ' )
ylabel ( ' Reflectance ' );
load SPR_data . txt ;
[ sx , sy ]= size (SPR_data) ;
for i =1:250
y_data ( i )=SPR_data( i +150 ,2)/7E4 ;
%x_data ( i )=i ;
end
% options = fitoptions ( ' NonlinearLeastSquares ' ,method ) ;
%
%
% [ fresult , gof , fout ]= fit (vinkel, y_data , spr_calc , options ) ;
%figure(1) ;
%hold on
%plot( vinkel , R_list )
%hold on ;
%figure ( 1 ) ;
%plot(vinkel , R_list )
%figure (2) ;
%plot(vinkel , y_data ) ;
%figure(2) ;
%plot(vinkel , R_list-y_data ) ;
end
function [R_list] = spr_calc(n_Ma,n_buffer,d_Ma,d_Au,vinkel,theta_start,theta_slut,deltatheta,thetasteps,theta)
lambda_0=780E-9;
n_glass =1.77;
n_Cr=3.11982+3.44408i ; % http : / / refractive index . info/? group=METALS&material=Chromium d.11n_Au=0.17-4.93i ; %Stenberg etal . 1991
n_Ma=n_Ma;
n_buffer=n_buffer ;
d_Cr=1E-9;
d_Au=d_Au;
d_Ma=d_Ma;
% theta_start=51; %GRADER! !
% theta_slut=55; %GRADER! !
% thetasteps=250;
n1=n_glass ;
n2=n_Cr ;
n3=n_Au;
n4=n_Ma;
n5=n_buffer;
eps1=n1^2;
eps2=n2^2;
eps3=n3^2;
eps4=n4^2;
eps5=n5^2;
k=2*pi/lambda_0 ;
% theta_start=theta_start /360*2* pi ;
% theta_slut=the ta_slut /360*2* pi ;
% deltatheta=( theta_slut-theta_start ) / (thetasteps-1);
for t =1:1: thetasteps
theta=theta_start+deltatheta *( t-1);
kx=k* n_glass * sin ( theta ) ;
kz1=sqrt (-(kx^2)+k^2* eps1 ) ;
if imag ( kz1 )>0 ,
kz1=-kz1 ;
end
kz2=sqrt (-(kx^2)+k^2* eps2 ) ;
if imag ( kz2 )>0 ,
kz2=-kz2 ;
end
kz3=sqrt (-(kx^2)+k^2* eps3 ) ;
if imag ( kz3 )>0 ,
kz3=-kz3 ;
end
kz4=sqrt (-(kx^2)+k^2* eps4 ) ;
if imag ( kz4 )>0 ,
kz4=-kz4 ;
end
kz5=sqrt (-(kx^2)+k^2* eps5 ) ;
if imag ( kz5 )>0 ,
kz5=-kz5 ;
end
beta_Cr=kz2*d_Cr ; %2*pi /lambda_0 *(n_Cr*d_Cr* cos ( theta ) ) ;
beta_Au=kz3*d_Au; %2*pi /lambda_0 *(n_Au*d_Au* cos ( theta ) ) ;
beta_Ma=kz4*d_Ma; %2*pi /lambda_0 *(n_Ma*d_Ma* cos ( theta ) ) ;
L_Cr=zeros(2) ;
L_Cr(1 ,1)=exp(-1i *beta_Cr ) ;
L_Cr(2 ,2)=exp (1i *beta_Cr ) ;
L_Au=zeros(2) ;
L_Au(1 ,1)=exp(-1i *beta_Au ) ;
L_Au(2 ,2)=exp (1i *beta_Au ) ;
L_Ma=zeros(2) ;
L_Ma(1 ,1)=exp(-1i *beta_Ma ) ;
L_Ma(2 ,2)=exp (1i *beta_Ma ) ;
b1=(n1/n2 )^2*( kz2 /kz1 ) ;
b2=(n2/n3 )^2*( kz3 /kz2 ) ;
b3=(n3/n4 )^2*( kz4 /kz3 ) ;
b4=(n4/n5 )^2*( kz5 /kz4 ) ;
rho_glass_Cr=(1-b1)/(1+b1 ) ;
rho_Cr_Au=(1-b2)/(1+b2 ) ;
rho_Au_Ma=(1-b3)/(1+b3 ) ;
rho_Ma_buffer=(1-b4)/(1+b4 ) ;
tau_glass_Cr=(2*(n1/n2 ))/(1+b1 ) ;
tau_Cr_Au=(2*(n2/n3 ))/(1+b2 ) ;
tau_Au_Ma=(2*(n3/n4 ))/(1+b3 ) ;
tau_Ma_buffer=(2*(n4/n5 ))/(1+b4 ) ;
H_glass_Cr=ones (2)/ tau_glass_Cr ;
H_glass_Cr(1,2)=rho_glass_Cr / tau_glass_Cr ; %rho i s r e f l e c t i o n c o e f f i c i e n t s
H_glass_Cr(2,1)=rho_glass_Cr / tau_glass_Cr ; %rho i s r e f l e c t i o n c o e f f i c i e n t s
H_Cr_Au=ones(2)/tau_Cr_Au ;
H_Cr_Au(1,2)=rho_Cr_Au/tau_Cr_Au ; %rho i s r e f l e c t i o n c o e f f i c i e n t s
H_Cr_Au(2,1)=rho_Cr_Au/tau_Cr_Au ; %rho i s r e f l e c t i o n c o e f f i c i e n t s
H_Au_Ma=ones (2)/tau_Au_Ma ;
H_Au_Ma(1,2)=rho_Au_Ma/tau_Au_Ma ; %rho i s r e f l e c t i o n c o e f f i c i e n t s
H_Au_Ma(2,1)=rho_Au_Ma/tau_Au_Ma ; %rho i s r e f l e c t i o n c o e f f i c i e n t s
H_Ma_buffer=ones (2)/ tau_Ma_buffer ;
H_Ma_buffer(1,2)=rho_Ma_buffer/tau_Ma_buffer ; %rho i s r e f l e c t i o n c o e f f i c i e n t s
H_Ma_buffer(2,1)=rho_Ma_buffer/tau_Ma_buffer ; %rho i s r e f l e c t i o n c o e f f i c i e n t s
S_glass_buffer=H_glass_Cr*L_Cr*H_Cr_Au*L_Au*H_Au_Ma*L_Ma*H_Ma_buffer ;
R_list(1,t )=( abs(S_glass_buffer ( 1 , 2 ) / S_glass_buffer ( 2 , 2 ) ) )^2 ;
% vinkel (t)=theta /(2* pi ) * 3 6 0 ;
end
% figure(1) ;
% hold on
% plot(vinkel , R_list )
% [ sy , sx ]= s i z e ( R_l i s t ) ;
%
% for i =1:(sx-5)
% theta=the ta_start+deltatheta *(i -1);
% diff_R_list(i)=(-R_list(i)+R_list(i+5))/(5) ;
% diff_vinkel(i)=theta/(2* pi)* 360 ;
% end
%
% for i =1:(sx-6)
% theta=theta_start+deltatheta *( i-1);
% if sign ( diff_R_list ( i ))==sign ( diff_R_list (i +1))
% signchange (i)=0;
% else
% sign_note=theta /(2* pi )*360
% end
% end
%
% figure(2)
% plot ( diff_vinkel , diff_R_list )
end
function [ y_data ] = data_import(vinkel)
load SPR_data.txt ;
[sx,sy]= size(SPR_data) ;
for i =1:250
y_data( i )=SPR_data( i +150 ,2)/7E4 ;
%x_data( i )=i ;
end
x_data=vinkel ;
% hold on ;
%
% figure(2) ;
% plot( x_data , y_data )
end
0 Comments
Answers (1)
See Also
Categories
Find more on Sparse Matrices in Help Center and File Exchange
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!