Hello, I try to use gscatters to draw the pca plot.
>> a=randn(10)
a =
0.1380 1.1569 -0.1609 0.3105 0.5558 0.4394 -0.8964 -1.0145 0.8531 -0.4698
-0.7107 0.0530 0.4093 -0.2495 -1.1203 -0.0896 -1.2033 -0.2133 0.4043 0.8864
0.7770 -1.2884 -0.9526 0.5037 -1.5327 1.0212 1.0378 -0.3253 -0.7006 -1.3852
0.6224 -0.3712 0.3173 -0.8927 -1.0979 -0.8740 -0.8459 1.9444 -1.6305 -1.9568
0.6474 -0.7578 0.0780 1.9085 -1.4158 0.4147 -0.1729 -0.5718 1.4600 0.4207
-0.4256 -0.5640 1.3244 0.1222 0.0596 0.3484 -1.2087 -0.2500 2.0500 0.4007
1.0486 0.5551 -0.2132 1.0470 -0.4113 0.3493 -0.2971 -1.5693 0.1205 0.0951
0.6607 -0.5568 -0.1345 -0.2269 -0.3680 -0.7292 -3.2320 -0.4774 -0.9899 0.4967
2.5088 -0.8951 -1.1714 -0.1625 -1.3610 0.3268 -1.0870 -1.3380 1.1978 1.0822
1.0635 -0.4093 -1.3853 0.6901 0.7796 -0.5149 -1.4264 0.0303 -0.5927 0.9704
>> [~, scores,pcvars]=pca(a)
scores =
0.7231 -0.4236 -0.8435 1.6875 -0.6992 0.2655 -0.0274 -0.0061 -0.3268
0.1185 -0.8979 -1.0235 -0.6050 -0.0047 -0.8379 -0.6529 0.6096 -0.0189
-0.9948 2.9174 0.1385 0.0806 0.1037 -0.2427 -0.5801 -0.5163 -0.0227
-3.8238 0.2561 -0.6242 -0.3132 -0.2561 0.4312 0.4093 0.3275 0.0336
1.5496 1.1953 -0.4926 -0.6628 0.9139 -0.1605 0.7067 0.1346 -0.2196
1.2263 -0.9438 -2.0018 -0.6615 0.0639 0.6865 -0.1349 -0.4513 0.2163
0.9502 0.5985 0.2710 1.1530 -0.2914 -0.5412 0.4474 0.1301 0.3926
-0.9756 -2.1818 1.0927 -0.3772 -0.0722 -0.6675 0.2564 -0.6411 -0.0881
1.4738 0.4494 1.9580 -1.1421 -0.9287 0.4928 -0.0722 0.2144 -0.0180
-0.2473 -0.9696 1.5253 0.8409 1.1708 0.5739 -0.3524 0.1987 0.0517
pcvars =
2.6823
2.0158
1.5384
0.8532
0.4142
0.3139
0.2049
0.1645
0.0410
>> x=zscore(scores(:,1));
>> y=zscore(scores(:,2));
>> z=zscore(scores(:,3));
>> gscatter3(x,y,z,tmp1,{'b','g','m'},{'.','.','.'},15)
Error using num2str (line 45)
Input to num2str must be numeric.
Error in gscatter3 (line 103)
g=cellstr(num2str(g'))';

7 Comments

YT
YT on 6 Sep 2018
'gscatter3' seems to be a custom function, it's hard for others to know what exactly is going on without knowing how 'gscatter3' looks like.
tmp1 is undefined as well.
Hello, Walter Roberson,
Thank you so much for your suggestion!
I have already defined tmp1 as follows:
> tmp1
tmp1 =
1×10 cell array
Columns 1 through 6
{["StageIIB"]} {["StageIIB"]} {["StageIIB"]} {["StageIIIA"]} {["StageIIIA"]} {["StageIIIA"]}
Columns 7 through 10
{["StageIIIA"]} {["StageIV"]} {["StageIV"]} {["StageIV"]
In executable form for testing, that would be
tmp1 = {"StageIIB", "StageIIB", "StageIIB", "StageIIIA", "StageIIIA", "StageIIIA", "StageIIIA", "StageIV", "StageIV", "StageIV"};
There appear to be two gscatter3() in the file exchange: which of the two are you using? I pulled out the more recent one; it fails in a different way than you posted, complaining
Cell array input must be a cell array of character vectors.
It is unlikely that you should be using a cell array of string objects: either a cell array of character vectors or a string array would be more likely.
Hello, Walter Roberson,
Thank you so much for your suggestion!
Still same mistake.
>> tmp1 = {"StageIIB", "StageIIB", "StageIIB", "StageIIIA", "StageIIIA", "StageIIIA", "StageIIIA", "StageIV", "StageIV", "StageIV"};
>> gscatter3(x,y,z,tmp1,{'b','g','m'},{'.','.','.'},15)
Error using num2str (line 45)
Input to num2str must be numeric.
There appear to be two gscatter3() in the file exchange: which of the two are you using? Are you using https://www.mathworks.com/matlabcentral/fileexchange/37970-gscatter3 by Salai Selvam V labeled version 1.0.0.0, or are you using https://www.mathworks.com/matlabcentral/fileexchange/61502-gscatter3 by Gustavo Ferraz Trindade labeled version 1.1.0.0, or are you using something else?
yue li
yue li on 6 Sep 2018
Edited: yue li on 6 Sep 2018
Hello, Walter Roberson,
Thank you for your response.
I was use the first one. But still the same mistake.
Thank you again!

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 Accepted Answer

For that version of gscatter3:
gscatter3(x,y,z,cellstr(tmp1),{'b','g','m'},{'.','.','.'},15)
You cannot pass that routine a cell array of string variables, but you can pass it a cell row vector of character vectors.

2 Comments

yue li
yue li on 7 Sep 2018
Hello, Walter Roberson,
Thank you so much for your great help!
Actually, I spent the whole day.
Thank you again!
Yue Li
Hi,
I did exactly the same in my code. But, it says:
"If clr is a cell array of strings, the length of clr must be equal to the length of x, y and z."
I don't know what to do. Any help please?
Sorry for asking simple question :(

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