Community Profile

photo

Rick Paxson

MathWorks

Last seen: Today |  Active since 2011

Followers: 0   Following: 0

Message

Professional Interests: Computational Biology, Dynamic System Analysis, ODE Solvers, PDEs

Programming Languages:
Python, C++, C, Javascript, MATLAB, Shell, Objective-C, Fortran
Spoken Languages:
English, Spanish
Pronouns:
He/him

Statistics

  • Knowledgeable Level 2
  • First Answer

View badges

Feeds

View by

Answered
When using simbiology, I have a species that calls a function that uses a linear programming solver (glpk) and when I use it, the dosing stops working
I suspect the issue might be with how glpk is getting called. In particular I wonder if it is called synchronously such that the...

7 months ago | 0

Answered
What are the units of data (specifically dose) to be input in sbionca
Hello, This is not your mistake but rather ours. There is a bug with unit conversion in NCA. C_max_Dose is (silently) being r...

11 months ago | 0

Answered
Is .sbproject files accepted by US FDA for IND ectd submission?
Hello Vinu, I am aware of submissions to the FDA in sbproj format from SimBiology. That said, if you are required to submit ...

1 year ago | 1

| accepted

Answered
How do I resolve, error in resample ?
Thank you for reporting this. It appears to be a bug in sbioensemblestats. The default interpolation method used requires at lea...

2 years ago | 1

| accepted

Answered
Accessing PK library models from code
Hello, Yes you can use PKModelDesign to construct simple PK models from the command line (i.e. in code). I'll refer you to t...

3 years ago | 1

Answered
What does this message mean, "CVODES returned -4..." ?
Hello, First let me comment on the message you are seeing. 'h' is the time step the ODE solver, in this case CVODES, is attemp...

4 years ago | 1

| accepted

Answered
Problems with SimBiology analysis of BioModels files.
Hi - Unfortunately it is often the case that models have no units specified. You might be able to figure out what the units are ...

5 years ago | 0

Answered
Fatal error during SBML import
Hello, It appears that the SBML file you are trying to load is not valid because many of the species are missing the Compartme...

5 years ago | 0

Answered
Dimensional checking in Simbiology
Hi, I am sorry you have having trouble running these examples. Let me try to help and maybe you can answer some questions fo...

6 years ago | 2

| accepted

Answered
Convert SimBiology model to script format.
There are a couple of ways of doing this from the MATLAB command line. Neither one produces a script from the model though. ...

9 years ago | 1

| accepted

Answered
Unit conversion in Simbiology
Hello Omar, SimBiology can operate in one of two modes when it comes to Units conversions and checking dimensions. By default ...

13 years ago | 0

| accepted

Answered
How do I add the reaction kinetics law for a pseudo-first order rate reaction?
Hi, The way to do this is to directly specify the reaction rate for the reaction rather than specifying a kinetic law. That is ...

13 years ago | 1