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Content Feed
How can I change the compartment, species and parameter through variants?
Hi, if you choose Initial Coniditions on the home tab of Model Builder, you will see that the values on the Initial Contitions c...
1 month ago | 1
| accepted
How can i do "code capture" in Simbiology of MATLAB 2020b version?
Hi, The "code capture" tool is not available in the current version of SimBiolgy. However, you can see the MATLAB code behind ...
4 months ago | 1
Slider in Simbiology Change Range
Hi Damir, In R2021a you can just type the upper and lower range in the area below the slider and click enter. Please see belo...
5 months ago | 0
| accepted
How can I optimize parallel simulations of a SimBiology model?
Hi Colton, Yes, using SimFunction would be better as it offers easy and efficient parallelization and avoids repeated compilati...
1 year ago | 1
| accepted
Where is "RUN GROUP SIMULATION" in Simbiology Version 5.10 (R2020a)?
Hi Isabel, group simulation is no longer available starting 19b. Instead, you can create a scan program where you can input Dose...
1 year ago | 0
| accepted
Submitted
SimBiology COVID-19 SEIR Model Examples
SimBiology implementations of COVID-19 SEIR models from literature
1 year ago | 13 downloads |
Can I generate MATLAB code for a PK simulation built with SimBiology APP?
Hi Wei, If you right-click on the program on Model Analyzer and choose View program code, this will open the code for the pro...
1 year ago | 2
compartment is not being used in the model
Hi, You can ignore the "compartment is not being used in the model" warning. This warning is a benign bug with this version. S...
1 year ago | 0
| accepted
how to incorpolate various variables in simbiology model
Hi Kazutaka, You can export SimBiology model from GUI to MATLAB workspace and then use a script to add parameters. If you keep...
1 year ago | 0
| accepted
How to do model fitting in simbiology
Hello, You can "dose" Body Weight to achieve this: Set "body weight" column as a dose column - dose2 if you already have an a...
1 year ago | 1
| accepted
How to compute NCA in case of drug infusion in Simbiology? There are options for bolus doses but is there a option to compute for drug infusion regimen?
Hi Praveen, NCA functionality in SimBiology currently doesn't support infusion dosing. Fulden
2 years ago | 0
| accepted
Is there a good tutorial for incorporating some of the MCMC code into a custom task in Simbiology?
Hi Andrew, You can implement this, or custom analyses in general, in SimBiology either by creating a custom task on SimBiology...
2 years ago | 0
| accepted
Submitted
SimBiology model for PK/PD of antibacterial drugs
SimBiology model for PK/PD of antibacterial drugs
2 years ago | 7 downloads |
Noncompartmental Analysis - Using Simbiology Desktop (How to Export the calculated statistics?)
Hi Kevin, if you right click anywhere on the NCA table (the table below the "Table of NCA Parameters" title) you'll be able to c...
3 years ago | 1
| accepted
Pull a conditional subset of a matrix
If a is a matrix of characters, you can do: a= ['00110'; '01000'; '01011'; '01101']; i = strfind(a(:,end)', '1'); b = a(...
3 years ago | 0
search an array and find the row and column number of a certain element
Let's assume you have the following array: myArray = {'an' 'example' 'p'}; You can use _find_ to obtain indices where the...
3 years ago | 0
| accepted
Submitted
Modeling Synthetic Biology Systems with MATLAB and SimBiology
SimBiology model used in the webinar: Modeling Synthetic Biology Systems with MATLAB and SimBiology
5 years ago | 2 downloads |
Submitted
SimBiology implementation of PBPK model for Trichloroethylene (TCE)
SimBiology model describing the metabolism and distribution of TCE using a human PBPK model
5 years ago | 3 downloads |
Submitted
Using SimBiology for Mechanism-Based PK/PD Modeling in Preclinical & Discovery
Examples used in the March 2012 webinar: Using SimBiology for Mechanism-Based PK/PD Modeling
5 years ago | 3 downloads |
Submitted
SimBiology model for Target-Mediated Drug Disposition (TMDD)
SimBiology implementation of the Target-Mediated Drug Disposition (TMDD) model
5 years ago | 12 downloads |
Submitted
Modeling Biology with SimBiology: An Introduction for iGEM Teams
SimBiology model used in webinar: Modeling Biology with SimBiology: An Introduction for iGEM Teams
5 years ago | 2 downloads |
Submitted
App Builder for SimBiology Models
Tool to automate the process of creating standalone, model-exploration apps for SimBiology model
7 years ago | 3 downloads |
